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| also: | Horizon League Independent |
| Year | Seed | Record | Finishing Round | Coach |
| 1961 | - | 0 - 1 | Round of 32 (1st rd) | Jim McCafferty |
| 1983 | 12 | 0 - 1 | Preliminary Round (7th rd) | Bob Staak |
| 1986 | 12 | 0 - 1 | Round of 64 (1st rd) | Pete Gillen |
| 1987 | 13 | 1 - 1 | Round of 32 (2nd rd) | Pete Gillen |
| 1988 | 11 | 0 - 1 | Round of 64 (1st rd) | Pete Gillen |
| 1989 | 14 | 0 - 1 | Round of 64 (1st rd) | Pete Gillen |
| 1990 | 6 | 2 - 1 | Sweet Sixteen (3rd rd) | Pete Gillen |
| 1991 | 14 | 1 - 1 | Round of 32 (2nd rd) | Pete Gillen |
| 1993 | 9 | 1 - 1 | Round of 32 (2nd rd) | Pete Gillen |
| 1995 | 11 | 0 - 1 | Round of 64 (1st rd) | Skip Prosser |
| 1997 | 7 | 1 - 1 | Round of 32 (2nd rd) | Skip Prosser |
| 1998 | 6 | 0 - 1 | Round of 64 (1st rd) | Skip Prosser |
| 2001 | 11 | 0 - 1 | Round of 64 (1st rd) | Skip Prosser |
| 2002 | 7 | 1 - 1 | Round of 32 (2nd rd) | Thad Matta |
| 2003 | 3 | 1 - 1 | Round of 32 (2nd rd) | Thad Matta |
| 2004 | 7 | 3 - 1 | Elite Eight (4th rd) | Thad Motta |
| 2006 | 14 | 0 - 1 | Round of 64 (1st rd) | Sean Miller |
| 2007 | 9 | 1 - 1 | Round of 32 (2nd rd) | Sean Miller |
| 2008 | 3 | 3 - 1 | Elite Eight (4th rd) | Sean Miller |
| 2009 | 4 | 2 - 1 | Sweet Sixteen (3rd rd) | Sean Miller |
| 2010 | 6 | 2 - 1 | Sweet Sixteen (3rd rd) | Chris Mack |
