Pepperdine NCAA Tournament Results
Tournament Record: 5 - 14
Current Conference: West Coast
| Year | Seed | Record | Finishing Round | Coach |
| 1944 | - | 0 - 2 | Elite Eight (1st rd) | Al Duer |
| 1962 | - | 1 - 1 | Sweet Sixteen (2nd rd) | Duck Dowell |
| 1976 | - | 1 - 1 | Sweet Sixteen (2nd rd) | Gary Colson |
| 1979 | 9 | 1 - 1 | Round of 32 (2nd rd) | Gary Colson |
| 1982 | 7 | 1 - 1 | Round of 32 (2nd rd) | Jim Harrick |
| 1983 | 11 | 0 - 1 | Round of 64 (1st rd) | Jim Harrick |
| 1985 | 14 | 0 - 1 | Round of 64 (1st rd) | Jim Harrick |
| 1986 | 12 | 0 - 1 | Round of 64 (1st rd) | Jim Harrick |
| 1991 | 14 | 0 - 1 | Round of 64 (1st rd) | Tom Asbury |
| 1992 | 11 | 0 - 1 | Round of 64 (1st rd) | Tom Asbury |
| 1994 | 14 | 0 - 1 | Round of 64 (1st rd) | Tom Asbury |
| 2000 | 11 | 1 - 1 | Round of 32 (2nd rd) | Jan van Breda Kolff |
| 2002 | 10 | 0 - 1 | Round of 64 (1st rd) | Paul Westphal |
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